PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010460
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 251aa    MW: 27969 Da    PI: 9.3673
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-43133731PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.77e-3547101155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kprl+WtpeLHerFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl
  Sof010460  47 KPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.30244104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-3345102IPR009057Homeodomain-like
SuperFamilySSF466891.76E-1846102IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-2547102IPR006447Myb domain, plants
PfamPF002495.3E-1149100IPR001005SANT/Myb domain
PfamPF143791.3E-25149195IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MYHHQQQLQS HSHFLSSRQT FPPERHMLLQ GGSIPAEPGL VLSTDAKPRL KWTPELHERF  60
VEAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNIHAQGN GGNAKNVVGW  120
SMAMEKPPEG NGLPASHLNL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQSVLE KAHETLLKQN AGLVVLETAK IQLSELVLKV SQNASDIAFT GFEEIEGLQN  240
LQGHTIQLGD G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2247103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2247103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2247103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2247103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2247103258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.89510.0crown
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467933.11e-163myb-related protein 2
SwissprotQ9SQQ91e-94PHL9_ARATH; Myb-related protein 2
TrEMBLC5X1R01e-162C5X1R0_SORBI; Uncharacterized protein
STRINGSb01g036680.11e-163(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.32e-94G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]