PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof010348

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

G2-like

Protein Properties

Length: 253aa MW: 28084.4 Da PI: 7.1972

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-90493	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl Sof010348 28 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	25	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-31	26	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-17	27	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-25	28	83	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	7.7E-24	115	160	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
XHNEHASNIG GIGGPNVSNP ANPVGSGKQR LRWTSDLHNR FVDAIAQLGG PDRATPKGVL 60 TVMGVPGITI YHVKSHLQKY RLAKYIPESP AEGSKDEKKD SSDSLSNTDS APGLQINEAL 120 KMQMEVQKRL HEQLEVQRQL QLRIEAQGRY LQMIIEEQQK LGASIKASED QKLSDSPPSL 180 DDYPESMQPS PKKPRINALS PDSERDRTQP EFESHLIGPW DQEICGKNMR CCIPSGGVQS 240 RPLYEQVIKQ TSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	27	85	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14339	0.0	crown\| inflorescence\| leaf\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441302.1	1e-163	myb family transcription factor PHL7
Swissprot	Q9SJW0	3e-72	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	C5Z088	1e-162	C5Z088_SORBI; Uncharacterized protein
STRING	Sb09g024090.1	1e-163	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-53	G2-like family protein