PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010160
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 255aa    MW: 28271.2 Da    PI: 11.495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-114407PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-163887255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr +k +g+WvAeIr+p +   r+r++lg++ ta  Aa+a++ a  +l+g
  Sof010160 38 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATAVAAARAYDTAVFYLRG 87
               69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-303796IPR001471AP2/ERF domain
PfamPF008478.3E-103887IPR001471AP2/ERF domain
CDDcd000186.83E-213896No hitNo description
SuperFamilySSF541711.37E-213897IPR016177DNA-binding domain
SMARTSM003802.5E-3638101IPR001471AP2/ERF domain
PROSITE profilePS5103222.7343895IPR001471AP2/ERF domain
PRINTSPR003676.9E-123950IPR001471AP2/ERF domain
PRINTSPR003676.9E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
XVKMEAEQAA MAAAGAATAS QLGSAHQHHH QQMQPRRQYR GVRMRKWGKW VAEIREPHKR  60
TRIWLGSYAT AVAAARAYDT AVFYLRGRSA RLNFPDEIPS LALSEGGEPD TADGAGTLSA  120
ASIRKKAIEV GSRVDALQTG MMVPPPHHRE RQRHHHHHHL PQLRVHAHAE EEQEQKPQPP  180
QRPAWTGRVK NPDLKRGPSP KSXPSPSDKR ATSKGSNVKE VRNWSVPNPA TTPSTTRQRA  240
LRGPQVVATI LMGPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1537100468ATERF1
3gcc_A4e-1537100468ATERF1
5wx9_A1e-1438981475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.157080.0bud| inflorescence| leaf| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448639.21e-83ethylene-responsive transcription factor ERF008
TrEMBLA0A1B6PNK72e-82A0A1B6PNK7_SORBI; Uncharacterized protein
STRINGPavir.J27349.1.p4e-78(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.17e-31DREB and EAR motif protein 3