PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof009808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28010.4 Da PI: 7.4421 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 132 | 179 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f eL + l + + K +Ka+iL A++ + +L Sof009808 132 SKASREKMRRNKLNDRFLELGSTLEPG---KPVKADKAAILSDATRMVIQL 179 6778**********************9...99*************988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-13 | 126 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.795 | 128 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.87E-7 | 131 | 184 | No hit | No description |
Pfam | PF00010 | 5.7E-7 | 132 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-12 | 132 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-8 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
LTCSSLLSSS PATGDRLPNL GSATRGTKRS TNLAISTQKV SSAAAAAMSL PPGPADGGTG 60 DDWFLDCGIL DDLPAAACGA FPWDASPSSS NPSVEVGSYV NTTDVFKEPN DVFKEPGSNK 120 RLRSGSNDVP TSKASREKMR RNKLNDRFLE LGSTLEPGKP VKADKAAILS DATRMVIQLR 180 SEAQQLKETN GSLEEKIKEL KAEKDELRDE KQKLKLEKES LEHQMKLMTS TPAYMPHPTL 240 MPAPFPQAPL APFHAQGQAA X |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.14169 | 0.0 | bud| callus| inflorescence| meristem| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320712.1 | 1e-143 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 3e-50 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1B6PFC8 | 1e-142 | A0A1B6PFC8_SORBI; Uncharacterized protein | ||||
STRING | Sb07g002900.1 | 1e-143 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-29 | bHLH family protein |