PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008968
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family BES1
Protein Properties Length: 276aa    MW: 28735.8 Da    PI: 6.7703
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-11998PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82293.84e-29110348148
     DUF822  48 neVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa........asll 137
                neVlkALc+eAGw+ve+DGttyrkg+kpl  e+a+ +g+sas sp+ss+q        +sp++sy++sp+sssfps+ s+++i+l  +        +sl+
  Sof008968   1 NEVLKALCNEAGWTVEPDGTTYRKGCKPLatERADPIGRSASPSPCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGNnfmggvegNSLI 92 
                9****************************9999*****************........*************************999889*********** PP

     DUF822 138 pvlsvlslvss 148
                p+l++ls++ss
  Sof008968  93 PWLKNLSSSSS 103
                *****998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.8E-36199IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
NEVLKALCNE AGWTVEPDGT TYRKGCKPLA TERADPIGRS ASPSPCSSYQ PSPRASYNPS  60
PASSSFPSSG SSSHITLGGN NFMGGVEGNS LIPWLKNLSS SSSFASSSKF PQLHHLYFNS  120
GSISAPVTPP SSSPTRTPRI KTDWENPNVQ PPWAGANYAS LPNSQPPSPG HQVAPDPAWL  180
AGFQISSAGP SSPTYSLVAP NPFGIFKETI ASTSRMCTPG QSGTCSPVMG GVPIHHDVQM  240
VDGAPDDFAF GSSSNGNNES PGLVKAMGGE RIPQEC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.111950.0crown| inflorescence| meristem| root| stem
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437132.11e-174protein BZR1 homolog 3
SwissprotQ5Z9E51e-160BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLC5Z4I11e-172C5Z4I1_SORBI; Uncharacterized protein
STRINGSb10g021750.11e-173(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.18e-36BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]