PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008856
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-YB
Protein Properties Length: 279aa    MW: 31913.4 Da    PI: 9.0136
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-63007PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB72.47.5e-231193385
      NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
               ++d  lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al++lGf +y+e++ +
  Sof008856 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYIEEVYA 93
               67999*************************************************************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-388139IPR009072Histone-fold
SuperFamilySSF471131.58E-3412140IPR009072Histone-fold
PfamPF008086.0E-201579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE  60
VCSREEKKTI APEHVLKALS DLGFREYIEE VYAAYEQHKL DTLDSPKASK FTGIEMTEEE  120
AVAEQQRMFA EARARMNNGA PKPKEQNKSC HSNHKHNPNF SCILNNSNPC NLNCSCIRQH  180
SIPSNLNCSC TLSHNRSPKC RCTLSRSSPH KCRSIRSCSN PHKCRSTRSL RNPKCRSTLS  240
RSSPHKCKCI HQPNKLSNPN LRYICNHRNP YKRSWNPKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-311213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.54580.0callus| crown| inflorescence| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141894.11e-103uncharacterized LOC100274041
RefseqXP_004973302.11e-103protein Dr1 homolog
SwissprotP495921e-76NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A317Y8681e-102A0A317Y868_MAIZE; Protein Dr1
TrEMBLA0A3L6RFF91e-102A0A3L6RFF9_PANMI; Uncharacterized protein
TrEMBLB4FFQ81e-102B4FFQ8_MAIZE; CCAAT1-Dr1 transcription factor
TrEMBLK3YIU01e-102K3YIU0_SETIT; Uncharacterized protein
STRINGSi014159m1e-103(Setaria italica)
STRINGGRMZM2G146286_P011e-103(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-80nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]