PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008554
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 287aa    MW: 31391.3 Da    PI: 6.6868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-39891PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-1680126455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Sof008554  80 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 126
                6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-2173136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-2073136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.07676125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-1779130No hitNo description
PfamPF000107.8E-1480126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1882131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MALLQHHQRR RQLEEEEGVR RQMFAGVAAF PEALGHGQQV DYGEDAGGLG DSDAGGSEPE  60
PPPERMRGGS GSKRSRAAEV HNLSEKRRRS KINEKMKALQ SLIPNSNKTD KASMLDEAIE  120
YLKQLQLQVQ MLSMRNGVYL NPPYLSGAIE PAQASQMFAA LGGGNITASS SGAVMPPVNQ  180
SSGVHQAIDP LNPPRNQPLS FVLPNVDKTI QEAPFHLESS QSHLRIFRMP ESSEMMLPGE  240
VVAKHQVTST QERVSLPGID MNPFGENHPI VTLIILMVAH IAKSDYX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.228081e-146inflorescence| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436548.21e-165transcription factor bHLH78
TrEMBLA0A1W0VRK21e-164A0A1W0VRK2_SORBI; Uncharacterized protein
STRINGSb10g004500.11e-165(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-36bHLH family protein