PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008399
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 291aa    MW: 33203.3 Da    PI: 6.6768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17394198PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.11.4e-391412028128
        NAM  28 leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdW 121
                +++++vi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk    k++++g+kktLvf++grapkge+t W
  Sof008399  14 ISENQVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRIIKSKgdkrKQHTIGMKKTLVFHRGRAPKGERTGW 113
                556689**************96446677888**************************************988777777********************** PP

        NAM 122 vmheyrl 128
                +mheyr 
  Sof008399 114 IMHEYRT 120
                *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.0741141IPR003441NAC domain
PfamPF023659.2E-1715119IPR003441NAC domain
SuperFamilySSF1019411.96E-4418141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
XGPNFRGRPT RAIISENQVI PEIDVCKCEP WDLPDKSLIR SDDPEWFFFA PKDRKYPNGS  60
RSNRATEAGY WKATGKDRII KSKGDKRKQH TIGMKKTLVF HRGRAPKGER TGWIMHEYRT  120
TEPEFESGEQ GGYVLYRLFR KQEEKTERPT PEEMDRSGYS PTPSRSSPDN LEVNEEANTP  180
LNKESPESAL DDPIELPHFC ETPCWSVTKW LADRNXYLVA TGTGVXPYKF PXDMLLVYTK  240
GDPSTGWLSQ LSNPLNGNDG LYNFGSGLPP FYTLKMHSFL ITEGSFCFEG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-381814247166NO APICAL MERISTEM PROTEIN
1ut4_B3e-381814247166NO APICAL MERISTEM PROTEIN
1ut7_A3e-381814247166NO APICAL MERISTEM PROTEIN
1ut7_B3e-381814247166NO APICAL MERISTEM PROTEIN
3swm_A3e-381814250169NAC domain-containing protein 19
3swm_B3e-381814250169NAC domain-containing protein 19
3swm_C3e-381814250169NAC domain-containing protein 19
3swm_D3e-381814250169NAC domain-containing protein 19
3swp_A3e-381814250169NAC domain-containing protein 19
3swp_B3e-381814250169NAC domain-containing protein 19
3swp_C3e-381814250169NAC domain-containing protein 19
3swp_D3e-381814250169NAC domain-containing protein 19
4dul_A3e-381814247166NAC domain-containing protein 19
4dul_B3e-381814247166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.85280.0inflorescence| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320654.11e-150protein NTM1-like 9 isoform X1
SwissprotB5X5706e-54NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A1Z5R8991e-149A0A1Z5R899_SORBI; Uncharacterized protein
STRINGSb07g003900.11e-149(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-56NAC 014