PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008283
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family B3
Protein Properties Length: 294aa    MW: 33082.3 Da    PI: 9.7409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-635133725PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-1718105196
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ffkv+ p    ++ rl +p  f ++ +++++++  + l+ +sg++W+ +l     s+   +++GWkeF+ ++ Lk g f+vF++dg+s+f   v +
  Sof008283  18 FFKVFFP--EQSRERLKIPPMFHQHLKEQPTGP--VYLKGPSGKKWQATL--ASESEVWSFEQGWKEFATDHSLKKGYFLVFTYDGTSQF--SVAA 105
                7888855..456677*******97669999998..***************..999999****************************9999..6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2115107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.92916109IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-1916107IPR015300DNA-binding pseudobarrel domain
CDDcd100175.56E-1816107No hitNo description
SMARTSM010192.1E-1318109IPR003340B3 DNA binding domain
PfamPF023621.6E-1418104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
XDREKEKTGA EKNVCPQFFK VFFPEQSRER LKIPPMFHQH LKEQPTGPVY LKGPSGKKWQ  60
ATLASESEVW SFEQGWKEFA TDHSLKKGYF LVFTYDGTSQ FSVAAFSPLG IIDPAALDAK  120
PTNEVVVEIE EDEGVQGDMD AGGASEVSIL PTEGHGVTGK RKRATSDIPA EANASKRHSG  180
VAKKADKRRH QAGTSKDVPP IVHNATFSWW NNFKTSTRTQ IKDKIVPRSG KFLLKTSRAP  240
VVISQRRPVT EEEKDLALRK ANEFKSKYPF TVQIMMESYV YVGFFMNIAC EFVR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450488.21e-155B3 domain-containing protein Os11g0197600 isoform X2
TrEMBLA0A1B6PQP91e-154A0A1B6PQP9_SORBI; Uncharacterized protein
STRINGSb05g006090.11e-154(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-16B3 family protein