PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008282

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NF-YB

Protein Properties

Length: 294aa MW: 33409.9 Da PI: 8.8685

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-63008	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	72.9	5e-23	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al++lGf++y+e++ + Sof008282 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFKEYIEEVYA 93 67999*************************************************************************98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.4E-37	8	139	IPR009072	Histone-fold
SuperFamily	SSF47113	1.49E-34	12	140	IPR009072	Histone-fold
Pfam	PF00808	6.6E-20	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60 VCSREEKKTI APEHVLKALS DLGFKEYIEE VYAAYEQHKL DTLDSPKASK FTGIEMTEEE 120 AVAEQQRMFA EARARMNNGA PKPKEPEQEP PQQPQAQPQL QLHTQQQQPV QSQLAVAFAN 180 TAFXSNLNCS CTLSHNRSPK CRCTLSRSSP HKCRSIRSCS NPHKCRSTRS LRNPKCRSTL 240 SRSSPHKCSC IHQPNKLPNP NLRYICNHRS PHKRSCNPKC QVSCRHRRKA DLAW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-31	12	133	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.5458	0.0	callus\| crown\| inflorescence\| leaf\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973302.1	1e-103	protein Dr1 homolog
Swissprot	P49592	1e-77	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A2R4QNP3	1e-120	A0A2R4QNP3_9POAL; Repressor protein
STRING	Si014159m	1e-103	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	5e-80	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]