PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008236
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 295aa    MW: 31568.4 Da    PI: 8.4896
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-19011PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.1e-32170225156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Sof008236 170 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 225
                68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-29167228IPR009057Homeodomain-like
PROSITE profilePS5129414.278167227IPR017930Myb domain
SuperFamilySSF466898.96E-17168228IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25170225IPR006447Myb domain, plants
PfamPF002499.1E-8172223IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLVGGLEEER KKIEVFRREL PLCARLLADV IDELKEEAAK RGRDAEAKAD DGDKRKWMST  60
AQLWVDSDAK SDESDKEQRS EITSPSPKLL GGAPMPIRAV AAVPPLPPPF FRREDSSAGT  120
GLSLVSPATK APISPVAASD NASGRFCATM PPSGSGVNLH SQAQQQASRK ARRCWSPELH  180
RQFVAALHQL GGPQVATPKQ IREVMQVDGL TNDEVKSHLQ KYRLHNRRSP GAAPVSQPIM  240
LVGGLWAPQE QSSSGSPQGP LQFSGSGVAI STATVGGGDS SSSDDDNKSE GYSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-14170223154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14170223154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14170223154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14170223154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.189860.0callus| crown| inflorescence| leaf| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307622.11e-164transcription factor HHO5-like
TrEMBLA0A059Q2Z50.0A0A059Q2Z5_9POAL; DNA binding protein
STRINGSb01g007130.11e-153(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-42G2-like family protein