PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008173
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 297aa    MW: 31278.6 Da    PI: 8.9594
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-52133730PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.3e-1181125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I +++g   t  q+ s+ qky
        Sof008173  81 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SXTVIQIXSHAQKY 125
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1575131IPR009057Homeodomain-like
PROSITE profilePS5129412.10276130IPR017930Myb domain
TIGRFAMsTIGR015571.8E-1779128IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-579131IPR009057Homeodomain-like
SMARTSM007173.0E-780128IPR001005SANT/Myb domain
PfamPF002492.1E-881125IPR001005SANT/Myb domain
CDDcd001671.29E-583126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSTTPKPLDS AAAVTGGGGG GDEGGGGGGG GGGGGGGKKQ VRGAAAAAVM APPPMAVPAA  60
APAAGEEVRK VRKPYTITKS RESWTEPEHD KFLEALQLFD RDWKKIEAYV GSXTVIQIXS  120
HAQKYFLKVQ KNGTGEHLPP PRPKRKAAHS YPQKASKNAP AVSQTILSQQ QPNQREQGSV  180
MPMDTATVRD TNANVAVPSW DNTVAQPFSA GHVQGAVATN NCSSSIESPS GTWPSSEAVE  240
QENVVPPLRA MPDFARVYSF LGSIFDPDTS GHLQRLKAMD PIDIETVLLL VRNLPQT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.160270.0crown| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438834.21e-170protein REVEILLE 6 isoform X1
SwissprotQ8H0W32e-80RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A194YKS11e-168A0A194YKS1_SORBI; Uncharacterized protein
STRINGGRMZM2G057408_P021e-158(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-82MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]