PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007683

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

BES1

Protein Properties

Length: 314aa MW: 33592.3 Da PI: 10.1405

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-72986	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	182.8	1.5e-56	11	154	1	145
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslks 100 g++gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkgskp+e+++++g+s ++p + s+ +s Sof007683 11 GAAGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKPMERMDHIGCSXVTKPLFLIPSQSTS 110 689************************************************************************************9999988888888 PP DUF822 101 salaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 + p +s +ss f+ p+++ + + + + +lp+l++ s+ Sof007683 111 IIQCKPYFLLFPSGASSPFLPPNEMVNGGI-DGNPILPWLKTFSN 154 888888888888888888888887666655.45777888777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.2E-51	13	152	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MASGGGGGGL GAAGRMPTWR ERENNKRRER RRRAIAAKIF AGLRAHGGYK LPKHCDNNEV 60 LKALCNEAGW VVEPDGTTYR KGSKPMERMD HIGCSXVTKP LFLIPSQSTS IIQCKPYFLL 120 FPSGASSPFL PPNEMVNGGI DGNPILPWLK TFSNGTPSKK HPLLPPLLIH GGSISAPVTP 180 PLSSPSARTP RMKTDWDEAT VQPPWHGANS PTIVNSTPPS PGRSIAPDPA WLAGIQISST 240 SPNSPTFSLV STNPFSVFKE SIPVGNPSSR MCTPGQSGTC FPAIPGMPPH SDVHMMDVVS 300 DEXXRRSSTN GAQX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-23	15	86	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-23	15	86	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-23	15	86	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-23	15	86	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18343	1e-165	bud\| callus\| crown\| inflorescence\| meristem\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454981.1	1e-163	protein BZR1 homolog 2
Swissprot	Q0JPT4	1e-128	BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBL	C5XL78	1e-162	C5XL78_SORBI; Uncharacterized protein
STRING	Sb03g002480.1	1e-162	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	8e-66	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]