PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007425
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 325aa    MW: 34462.6 Da    PI: 7.5372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-81503PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-07276320654
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +++Er   +ri +++ +L++l+P+     +k  + ++i+ +A +YIk+L
  Sof007425 276 SIAERXKKNRISKRLKKLQDLVPNM----DKQTNTSDIVDLAGDYIKEL 320
                57899999****************7....688***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.519270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-10273324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-8274324No hitNo description
Gene3DG3DSA:4.10.280.102.4E-9275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5276320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
XGSGLARYGS APGSLLAAIA ESVTRGDPAP PPVSRFYSAE SSGLTSCESS CRTDGGGRPP  60
PLERAYGGSG EIRLPPPPQQ QQQQHQKHPL AAAPAASPLF RHSSSPAGLI SRLMADPHGM  120
AATGGMGSYS QAGTDAAMGH GHRQLSSQWS FSRQDLPQIS EMGMIPDIGE SIVAGGCNSS  180
SDGGGAQAQA SSYLSRNFSV SSWDDTNSIM FSSPSKKPKV DPADDMVTNF SNIDSQFGLS  240
NSSLELPGMD DYLQPQQDSV ACRVRAKRGC ATHPRSIAER XKKNRISKRL KKLQDLVPNM  300
DKQTNTSDIV DLAGDYIKEL KDQVX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281290KKNRISKRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.74410.0bud| callus| crown| inflorescence| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.10.0transcription factor bHLH128-like
TrEMBLA0A2P1L3F20.0A0A2P1L3F2_9POAL; Flowering BHLH 1
STRINGPavir.J01306.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-45bHLH family protein