PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007207
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 336aa    MW: 35477.5 Da    PI: 9.6145
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-5788PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like353.1e-112263155
    G2-like 31 tilelmkvkgLtlehvkSHLQkYRl 55
               +ilelm+v+gLt+e+v+SHLQk+Rl
  Sof007207  2 KILELMNVPGLTRENVASHLQKFRL 26
               69**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-11231IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-9226IPR006447Myb domain, plants
SuperFamilySSF466893.94E-6230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
XKILELMNVP GLTRENVASH LQKFRLYLKR IAQHHAGIPH SFVAPASSAK VAPLGGLEFQ  60
ALAASGQIPP QALAALQDEL LGRPTSSLAL PGRDQSSLRL AAIKGNKPHG EREIAFGQPI  120
YKCQNNTYGA FPQSSPAVGG LPSFAAWPNN KLGMTDSPST LGNVGNSQNS NMLLHELQQQ  180
PDTLLSGTLH NIDVKPSGVV MPSQSLNAFP ASEGISPNQN PLIIPSQSPS FLASIPPSMK  240
HEPLLGSPSP STSLLGGLDM VNQASTSQPL ISSHGAIVPG LMNRSSNAMP SPEXSNFQSG  300
NIPYVVNQNA IRVSSRPPGV LKTESTDSLS RXYGYI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.132192e-96crown| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotA2XE311e-180ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLC5WSM40.0C5WSM4_SORBI; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-25response regulator 2