PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007134

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Dof

Protein Properties

Length: 340aa MW: 35616.1 Da PI: 6.5845

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-38599	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	103	162	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Sof007134 103 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 162 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	99	160	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-32	104	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MIAECQGGGG GDFLIKLFGK TIPVPESGDA KDLQQSSSSS SWTEQDQDAH ALENARGDAP 60 AQPDSSEPSP QPEVVDAEDP KSSPETHQKP GDAASQREKL KKPDKVLPCP RCNSMDTKFC 120 YFNNYNVNQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKNK NAVAASHFLQ RVRAALPSCG 180 GGGDTLKTTN GTVLSFGHGG APPACLDLAE QLSHHLAPVI RNAGNPGPCS EGSSNRDDHK 240 TINDRSSVDE AAVNADVDGS VQHPASMNNG ATVWPPYSCA PSPAAYXSSG IAIPIYPAAP 300 GYWGCMVPGA GSLPWPVQQP LSQSQVPGLS SSSPTGTSAP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.11286	0.0	inflorescence\| leaf\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464638.1	0.0	cyclic dof factor 1
TrEMBL	C5WM75	0.0	C5WM75_SORBI; Uncharacterized protein
STRING	Sb01g022330.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-41	cycling DOF factor 2