PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007067

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 344aa MW: 37859.4 Da PI: 6.0101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-18030	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.6	1.1e-13	154	201	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + Er+RR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+Lq Sof007067 154 KNHVMSERKRREKLNEMFLILKSLVPSiH------KVDKASILAETIAYLKELQ 201 5899*********************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.936	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-16	154	205	No hit	No description
SuperFamily	SSF47459	2.62E-19	154	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-11	155	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-17	155	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-16	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
XMVVFEDLDH NATEMETITA VAGGQELGEA ESLSNASLEH ISKEIDEFYT LCEEMDVQPL 60 PLEDGWIMDG SNFEVPSSPQ PAPPGNLAYG SRSASFMAWT RSSQSCSDEA AAVPVIEEPQ 120 KLLKKVVAGG GGWANCGGGV GTSTTGTAQE SGIKNHVMSE RKRREKLNEM FLILKSLVPS 180 IHKVDKASIL AETIAYLKEL QRRVQELESS KELTSRPSQT TRPITRPRGI GNESVKKKLC 240 AGPKRKSPEF RRCVEKEHPP GSSPRTAPSN VTGAVLDRDV LPEVQCPWEV APDDPRVRRH 300 QRPSILTFFS VQASGPQMVS WGLRKPTQFG WLPWPPCPWD EPPX

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

XMVVFEDLDH NATEMETITA VAGGQELGEA ESLSNASLEH ISKEIDEFYT LCEEMDVQPL  60
PLEDGWIMDG SNFEVPSSPQ PAPPGNLAYG SRSASFMAWT RSSQSCSDEA AAVPVIEEPQ  120
KLLKKVVAGG GGWANCGGGV GTSTTGTAQE SGIKNHVMSE RKRREKLNEM FLILKSLVPS  180
IHKVDKASIL AETIAYLKEL QRRVQELESS KELTSRPSQT TRPITRPRGI GNESVKKKLC  240
AGPKRKSPEF RRCVEKEHPP GSSPRTAPSN VTGAVLDRDV LPEVQCPWEV APDDPRVRRH  300
QRPSILTFFS VQASGPQMVS WGLRKPTQFG WLPWPPCPWD EPPX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	ERKRRE
2	160	165	RKRREK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14148	0.0	root\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318742.1	1e-155	anthocyanin regulatory R-S protein isoform X1
Refseq	XP_021318743.1	1e-155	anthocyanin regulatory R-S protein isoform X1
Refseq	XP_021318744.1	1e-155	anthocyanin regulatory R-S protein isoform X2
Swissprot	P13027	1e-109	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A1Z5REW9	1e-154	A0A1Z5REW9_SORBI; Uncharacterized protein
STRING	Sb06g025040.1	1e-157	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	1e-22	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]