PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof006658
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HSF
Protein Properties Length: 372aa    MW: 39801.3 Da    PI: 6.716
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-178133731PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+
     Sof006658  27 FLTKTYQLVDDPAVDDVISWNDDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCDIH 114
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Sof006658 115 RRKV 118
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.2E-3820111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5923116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.26E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
PATTQPAEGV TAPAPVSAGQ RSVPTPFLTK TYQLVDDPAV DDVISWNDDG SAFIVWRPAE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKRLL CDIHRRKVTP  120
AAAATGALTV AAAAAAIPTA VPVGSPVYSG EEQVLSSSSS PEPPSLQHPP AAPSVSGSRG  180
VASGDRGEEN ERLRRENARL ARELGQMKKL CNNILLLMSK YAATQQPPDA AKQAAATGNC  240
SGESAEAAAA PPPPLPSILE LLPSCRGDPA GAATEHEAEK AGARLFGVSI GRKRMRDESN  300
GDYAGGVFED PASRAAEVKA EPVDTAHPDQ QQEHNATEPV PQSWPIYRPR PVYHPLRACS  360
AGSDHDGSNN SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-271411917131Heat shock factor protein 1
5d5v_B4e-271411917131Heat shock factor protein 1
5d5v_D4e-271411917131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.171700.0inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149902.10.0heat shock factor protein 7
SwissprotQ6Z9C81e-142HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLB6TJ680.0B6TJ68_MAIZE; Heat shock factor protein 7
STRINGGRMZM2G098696_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-59HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]