PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005967
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 503aa    MW: 52838.1 Da    PI: 7.9109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-92069PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46e-33210268260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g Hnh+k
  Sof005967 210 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRITQIVYKGAHNHPK 268
                8********************************************************85 PP
2WRKY105.72.4e-33373431159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+
  Sof005967 373 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVITTYEGKHNHD 431
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.613204269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-28206269IPR003657WRKY domain
SuperFamilySSF1182901.24E-25208269IPR003657WRKY domain
SMARTSM007741.0E-35209268IPR003657WRKY domain
PfamPF031061.3E-24210267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36358433IPR003657WRKY domain
SuperFamilySSF1182903.4E-29365433IPR003657WRKY domain
PROSITE profilePS5081138.124368433IPR003657WRKY domain
SMARTSM007743.6E-39373432IPR003657WRKY domain
PfamPF031061.5E-25374431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MASSTGSLEH GGFTFTPPPF ITSFTELLSG AGDVLGAGGA DQERSPRGLF HRGARGGGGV  60
GVPKFKSAQP PSLPISPPPM SPSSYFAIPA GLSPAELLDS PVLLHYSANT LASPTTGAIP  120
AQRFDWKQAA DLIASQQDDS RSGAIGGFND FSFHTATSNA MPAQTTSFPS FKQEQQQQQV  180
EAAATNKSAV VASSNKQASS GGGNSNTKLE DGYNWRKYGQ KQVKGSENPR SYYKCTYHSC  240
SMKKKVERSL ADGRITQIVY KGAHNHPKPL STRRNSSGGV AAAEEQQAAN NSLSAAAAGC  300
GPEHSGATAE NSSVTFGDDE AENGSHRSDG DEPDAKRWKQ EDGENEGSSG GAGGKPVREP  360
RLVVQTLSDI DILDDGFRWR KYGQKVVKGN PNPRSYYKCT TVGCPVRKHV ERASHDTRAV  420
ITTYEGKHNH DVPVGRGASS RAAAAAVAPT GSGSALMAAA GGQLGHQQQQ PYTLEMLSGG  480
AYGGGYAAKD EPRDDLFVDS LLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35209433177Probable WRKY transcription factor 4
2lex_A2e-35209433177Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.204420.0bud| callus| crown| leaf| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303401.10.0probable WRKY transcription factor 26 isoform X2
SwissprotQ6B6R41e-116WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1B6P7L20.0A0A1B6P7L2_SORBI; Uncharacterized protein
STRINGSb09g015900.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.13e-92WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]