PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof005889

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 592aa MW: 64949.8 Da PI: 6.4569

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-1133734	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00075	502	539	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s Lek+v+++ Lq Sof005889 502 RQLIQDRIKELRELVPNgA------KCSIDGLLEKTVKHMLFLQ 539 67799************66......8899999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.537	489	538	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-4	502	551	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MAVSASAKNS SSQHGQSRPD TATVSTSTPP HALLNASLLK VVQQNGHPVR DHTVYAEPDL 60 RFIQQASFCE KPIGRNYGVL DESSLTSPSL TSVKNQSLXM NNIGQLQLNN NAHSSADLAM 120 ARDIILKSLV RQDSSVCENT NMNMHHGRYV VSNDINGPGN FDFLPVGTRA SRANLSTSVS 180 SQILDHASGT LQQKQSLVPF KIPQSSELAK KMENPESRPF QTPSVRTSES DGQVSNSFNM 240 DQENLLSRSN NVRQDQKINR FSDPSANVST QRIKNRDGCE AGMPIERASS LLVEPAADND 300 LVDMFGSEFH QFSHNVGADL VTWSGTESQN SDRDVPESSI YLNSSPLFSS LDNELHYSGI 360 LSLTDTDQLL DAVISNVNPS GKQCTDDSAS CKTALTDVPS TSHLGSVDLK RCESSGMPSM 420 LIKHELAQFV KQPCLFDKSE EGCLSQNNGM HKSQIRLWIE SGQNMKCESA SASNSKGLDT 480 PSKANRKRSR QGESPKPRPK DRQLIQDRIK ELRELVPNGA KCSIDGLLEK TVKHMLFLQS 540 VTKNADKLKD STESKILGSE NGPLWKDYFE GWATWAFDGG SQSMTWSIIC EX

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MAVSASAKNS SSQHGQSRPD TATVSTSTPP HALLNASLLK VVQQNGHPVR DHTVYAEPDL  60
RFIQQASFCE KPIGRNYGVL DESSLTSPSL TSVKNQSLXM NNIGQLQLNN NAHSSADLAM  120
ARDIILKSLV RQDSSVCENT NMNMHHGRYV VSNDINGPGN FDFLPVGTRA SRANLSTSVS  180
SQILDHASGT LQQKQSLVPF KIPQSSELAK KMENPESRPF QTPSVRTSES DGQVSNSFNM  240
DQENLLSRSN NVRQDQKINR FSDPSANVST QRIKNRDGCE AGMPIERASS LLVEPAADND  300
LVDMFGSEFH QFSHNVGADL VTWSGTESQN SDRDVPESSI YLNSSPLFSS LDNELHYSGI  360
LSLTDTDQLL DAVISNVNPS GKQCTDDSAS CKTALTDVPS TSHLGSVDLK RCESSGMPSM  420
LIKHELAQFV KQPCLFDKSE EGCLSQNNGM HKSQIRLWIE SGQNMKCESA SASNSKGLDT  480
PSKANRKRSR QGESPKPRPK DRQLIQDRIK ELRELVPNGA KCSIDGLLEK TVKHMLFLQS  540
VTKNADKLKD STESKILGSE NGPLWKDYFE GWATWAFDGG SQSMTWSIIC EX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.304	0.0	callus\| crown\| inflorescence\| leaf\| meristem\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317175.1	0.0	transcription factor LHW isoform X2
TrEMBL	A0A1Z5RGL1	0.0	A0A1Z5RGL1_SORBI; Uncharacterized protein
STRING	Sb05g003740.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-30	conserved peptide upstream open reading frame 7