PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof005597 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | DBB | ||||||||||||
Protein Properties | Length: 127aa MW: 13334.1 Da PI: 5.8896 | ||||||||||||
Description | DBB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.1 | 8.4e-09 | 22 | 58 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ + ++++l+C++++ +lC+ C + H g H Sof005597 22 RPCDACAAEPARLHCREDGAFLCPGCDDRAH-GagsrH 58 78***************************99.445667 PP | |||||||
2 | zf-B_box | 25.3 | 3.2e-08 | 61 | 105 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p Sof005597 61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105 689*****************************6688888898877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.911 | 19 | 63 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.1E-5 | 19 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.6E-7 | 22 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.21E-6 | 22 | 63 | No hit | No description |
PROSITE profile | PS50119 | 10.424 | 59 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-6 | 61 | 106 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-9 | 64 | 106 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MDTAVELEQK PAVGYWSVVG ARPCDACAAE PARLHCREDG AFLCPGCDDR AHGAGSRHAR 60 VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPQPF 120 PSPAFAA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16080 | 1e-176 | leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811633.1 | 5e-67 | zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q9SK53 | 9e-38 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A3L6QDQ1 | 9e-66 | A0A3L6QDQ1_PANMI; Zinc finger protein CONSTANS-LIKE 3-like | ||||
STRING | Sb04g025660.1 | 3e-66 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.2 | 9e-25 | CONSTANS-like 3 |
Publications ? help Back to Top | |||
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