PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof005537 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | LSD | ||||||||||||
Protein Properties | Length: 135aa MW: 14173.2 Da PI: 8.3211 | ||||||||||||
Description | LSD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.6 | 8.7e-13 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+r A VRC++C+tV Sof005537 6 CGGCQTLLMYTRSADTVRCSCCNTV 30 ************************9 PP | |||||||
2 | zf-LSD1 | 49.5 | 7.1e-16 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Crt+L+YP+GApsV+Ca+C+ V Sof005537 44 CDQCRTTLMYPYGAPSVKCAICNYV 68 ***********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.7E-14 | 3 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-10 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.4E-12 | 41 | 69 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.9E-14 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MAHLICGGCQ TLLMYTRSAD TVRCSCCNTV NLVRPVNNIA HVNCDQCRTT LMYPYGAPSV 60 KCAICNYVTT TGVNTVAPTP SARPTSNESS YSGPSTSAPK SQPQNVTVVV ENPMTVDDKG 120 KLVSSVVVGV TAGKV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.1152 | 0.0 | callus| crown| inflorescence| leaf| meristem| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464188.1 | 2e-87 | protein LOL3 | ||||
Swissprot | Q6ASS2 | 6e-74 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | C5WR97 | 4e-86 | C5WR97_SORBI; Uncharacterized protein | ||||
STRING | Sb01g013820.1 | 6e-87 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-32 | LSD family protein |
Publications ? help Back to Top | |||
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