PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof005351 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||||||
Protein Properties | Length: 156aa MW: 17476.8 Da PI: 9.866 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 46.1 | 1.5e-14 | 10 | 124 | 7 | 114 |
NAM 7 FhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskk 96 F P +el+ ++L+ k++g++l+++ + ++++diy+++P L + + k+e+++w+fF++ + k++t++rk+r+++ g+W++ ++vl+ + Sof005351 10 FTP--SELL-CFLRLKIAGEPLPATAAahFHDADIYTADPALLATlfdpapEKKGESSSWFFFTHVRPKSSTDSRKSRQVAggVGTWHSERAPRRVLHDE 106 655..4788.89*********665442249*************755778765566777********************66623678************99 PP NAM 97 gelvglkktLvfykgrap 114 g+ +g + + + + ++ Sof005351 107 GNCTGHSQYFSYKLKIRE 124 999999999999844333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.494 | 1 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-14 | 9 | 120 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-5 | 10 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MPPPPGDCSF TPSELLCFLR LKIAGEPLPA TAAAHFHDAD IYTADPALLA TLFDPAPEKK 60 GESSSWFFFT HVRPKSSTDS RKSRQVAGGV GTWHSERAPR RVLHDEGNCT GHSQYFSYKL 120 KIREERQRED RMVHVGIQRR AKKPITSAFT GAKPTW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.644 | 0.0 | meristem| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303467.1 | 3e-65 | uncharacterized protein LOC8077939 | ||||
TrEMBL | A0A1Z5R2B4 | 2e-62 | A0A1Z5R2B4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g018837.1 | 1e-61 | (Sorghum bicolor) |