PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Sof005318 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||||||
Family | bHLH | ||||||||||||
Protein Properties | Length: 159aa MW: 16411.6 Da PI: 10.0292 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 35 | 100 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas...............kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++s +L +llP+a ++++k ++ + L A YIk+L+ Sof005318 35 KDVEKNRRLHMKSLCLKLSSLLPPAAthasllsdaaaaaayNPNNKDtVTQLDQLDSAAAYIKQLK 100 689*********************555*************94444445****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.74 | 29 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-11 | 33 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-9 | 34 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-5 | 35 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MKSRRQTSGG SSAACAAAGE ANTHSSGGGC KLERKDVEKN RRLHMKSLCL KLSSLLPPAA 60 THASLLSDAA AAAAYNPNNK DTVTQLDQLD SAAAYIKQLK ERIEALKQRK AGGPGQAAGC 120 ASASGVSSGG GVRMPVIEVR YQDGTLDVVL ISDAGRAFK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.6911 | 0.0 | inflorescence| seed |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967963.1 | 2e-64 | transcription factor bHLH168 | ||||
TrEMBL | A0A1E5WHH6 | 3e-63 | A0A1E5WHH6_9POAL; Uncharacterized protein | ||||
STRING | Si002847m | 9e-64 | (Setaria italica) |