PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof005297 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||||||
Protein Properties | Length: 161aa MW: 17875.9 Da PI: 10.0274 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 49 | 82 | 16 | 54 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i +++ L++++ + +K + a++L ++++YIk L Sof005297 49 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 82 667889999999988.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.074 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.45E-4 | 48 | 87 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-9 | 48 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-8 | 48 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
XARSSSSGSG AASDRKKRPS KERTSTVKKS KQEGSKPSPP KQQVPKVKIG EKITALQQIV 60 SPFGKTDTAS VLFETIKYIK FLHEQVQLLS EPYTNSSRSK VNQLPWGDHA AAETSKGGDE 120 AEHDLRDRGL CLVPVSWTPE VYRDGTAMDY WTPAYRGCLY R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15230 | 0.0 | inflorescence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452768.2 | 3e-96 | uncharacterized protein LOC8073915 | ||||
Swissprot | Q9FYJ6 | 9e-42 | BH111_ARATH; Transcription factor bHLH111 | ||||
TrEMBL | C5Y1A9 | 7e-95 | C5Y1A9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g032150.1 | 8e-97 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 1e-37 | bHLH family protein |