PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof005113 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | HSF | ||||||||||||
Protein Properties | Length: 175aa MW: 19050 Da PI: 10.052 | ||||||||||||
Description | HSF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108 | 7.1e-34 | 23 | 114 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y++++d++++ +i w +++nsfvv d+ f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++l+++i Sof005113 23 FVAKTYRMVDDPATDAVIAWGRDNNSFVVADPFVFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLMSQIV 110 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r++s Sof005113 111 RRSS 114 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.58E-33 | 19 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-52 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.2E-37 | 19 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.7E-30 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-18 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-18 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-18 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MDDRTTATNG GGAAVNAAGV APFVAKTYRM VDDPATDAVI AWGRDNNSFV VADPFVFSQT 60 LLPAHFKHSN FSSFVRQLNT YGFRKVDPDR WEFAHVSFLR GQTHLMSQIV RRSSGGNGGG 120 KRNKDDVVCT GNVNAVDEDA VATEVVRLRR EQRAIKEQVA RDVAPRAGNG PPAKX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-25 | 11 | 112 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-25 | 11 | 112 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-25 | 11 | 112 | 17 | 129 | Heat shock factor protein 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.11124 | 0.0 | bud| callus| inflorescence| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152657.1 | 6e-79 | heat shock factor protein 1 | ||||
Swissprot | Q6EUG4 | 2e-69 | HFC2A_ORYSJ; Heat stress transcription factor C-2a | ||||
TrEMBL | B4FXG7 | 5e-78 | B4FXG7_MAIZE; Heat stress transcription factor C-1 | ||||
STRING | GRMZM2G105348_P01 | 8e-79 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-43 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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