PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004948
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 184aa    MW: 20710.2 Da    PI: 9.5091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-119712PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +v+++G g+W+ I +          R+  ++k++w++
        Sof004948  5 KQRWTSEEEAALRAGVARHGVGNWRMILNDPElsstlRYRSNVDLKDKWRN 55
                     79****************************9999**999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.494161IPR017930Myb domain
SuperFamilySSF466891.22E-15258IPR009057Homeodomain-like
SMARTSM007171.0E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-13556IPR009057Homeodomain-like
PfamPF002492.8E-7556IPR001005SANT/Myb domain
CDDcd116602.55E-20657No hitNo description
SuperFamilySSF467852.18E-11121183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-13121183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005260.0011122183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150415.881124184IPR005818Linker histone H1/H5, domain H15
PfamPF005383.5E-7125183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGV ARHGVGNWRM ILNDPELSST LRYRSNVDLK DKWRNMNVIV  60
TSSSARDRGR TSTRRTRAAP KNNDHSLALS TVTSDVDDEI VDVNPIPIAS MPVEAWNTSN  120
SKKSHSRLDN IIMEAIKNLN EPTGSHRTTM ANYIEEQYWP PSDFDHLWSA KLKDLPTNGN  180
IVKG
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817366.11e-106single myb histone 5-like
RefseqXP_025817367.11e-106single myb histone 5-like
RefseqXP_025817368.11e-106single myb histone 5-like
SwissprotQ6WLH31e-105SMH5_MAIZE; Single myb histone 5
TrEMBLA0A2T7DRF91e-106A0A2T7DRF9_9POAL; Uncharacterized protein
TrEMBLA0A3L6R2B41e-107A0A3L6R2B4_PANMI; Single myb histone 5-like
STRINGPavir.Eb00490.1.p1e-105(Panicum virgatum)
STRINGPavir.J17249.1.p1e-106(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-48telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]