PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004721 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ZF-HD | ||||||||||||
Protein Properties | Length: 198aa MW: 20513.5 Da PI: 6.7855 | ||||||||||||
Description | ZF-HD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.9 | 2.8e-34 | 35 | 89 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr ve Sof004721 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACGCHRNFHRRAVE 89 7***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-28 | 35 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 36 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.207 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.3E-31 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDVKYKPVMF PNGAALKKQV KPAAVAPAGV GGEPLYRECL KNHAASLGGH AVDGCGEFMP 60 SPGANPADPT SLKCAACGCH RNFHRRAVEG SPPPPAPAPL ALPAPPPPSV LHGQPHRGGE 120 ETPEDRHHPG VVDADDSDSE SEGSEYHEER SVSPHPAANH VPAPVAQQPX GPAASYFCTA 180 PHMLLSLGFR GAPRAAVX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16028 | 0.0 | inflorescence| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145929.2 | 8e-68 | uncharacterized protein LOC100279452 | ||||
Swissprot | Q6ER21 | 3e-39 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | B6TFI1 | 2e-66 | B6TFI1_MAIZE; ZF-HD homeobox protein | ||||
TrEMBL | B7ZY68 | 2e-66 | B7ZY68_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DG72 | 2e-66 | K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment) | ||||
STRING | GRMZM2G161315_P01 | 3e-67 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-26 | zinc finger homeodomain 1 |