PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004538 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||||||
Protein Properties | Length: 205aa MW: 22759.3 Da PI: 10.3277 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156 | 1.6e-48 | 27 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lp+GfrF+Ptdeelv +yLk+k++g+ + i++vd+ +ePw+Lp k +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+ + s+ g Sof004538 27 LPVGFRFRPTDEELVRHYLKPKIAGRAHADLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKDRLIRSRpAG 126 79*************************888788***************5346667888**************************************9899 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +l+g+kktLvf++grap+g++t W+mheyr Sof004538 127 TLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 157 99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-55 | 24 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.813 | 27 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-27 | 28 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
XSISSAIAAG KGGTKAMQPP PQLPAALPVG FRFRPTDEEL VRHYLKPKIA GRAHADLLLI 60 PDVDLSACEP WELPAKALIR SDDPEWFFFA PLDRKYPGGH RSNRSTAAGY WKATGKDRLI 120 RSRPAGTLIG VKKTLVFHRG RAPRGHRTAW IMHEYRTAEP QLQQGQNGSF VLYRLFNKNE 180 EESEASDAAX FTVHIVSGHR TSGES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 13 | 179 | 5 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 13 | 179 | 5 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 13 | 179 | 5 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 13 | 179 | 5 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 13 | 179 | 8 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-46 | 13 | 179 | 5 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 13 | 179 | 5 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.10062 | 0.0 | inflorescence| leaf| meristem| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169690.1 | 1e-122 | uncharacterized protein LOC100383571 | ||||
Swissprot | F4JN35 | 2e-66 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | C0PH66 | 1e-121 | C0PH66_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G163914_P02 | 1e-122 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 3e-65 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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