PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004468 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | FAR1 | ||||||||||||
Protein Properties | Length: 208aa MW: 22992.2 Da PI: 8.9947 | ||||||||||||
Description | FAR1 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.4 | 5.6e-15 | 77 | 113 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk ++ Sof004468 77 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 113 6667777777************************876 PP | |||||||
2 | FAR1 | 50.1 | 9.4e-16 | 147 | 205 | 1 | 62 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 +fYn+YA +vGFsvrks+s+ks++n ++ rtfvCs+eg+++++k+ +++++r tr+ C Sof004468 147 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIRC 205 6*********************6666.899*************9988..999*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.2E-6 | 70 | 126 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-11 | 73 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.9E-12 | 76 | 115 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.7E-13 | 77 | 112 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.30E-8 | 87 | 114 | No hit | No description |
Pfam | PF03101 | 1.1E-12 | 147 | 206 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
LPAPNPNPNP ERPKKFAKIA HNFAADYLPG GDAMMHMLVA PDGGGGELQP YGAPPAEQEL 60 ELLRDNADDG LEGHVRCLRC GISGNATPHM RRGPDGPRTL CNACGIAYRK GKMRRMIEAK 120 PPIDEASLAK LVPEVGMEFV SEEKAYEFYN KYAGHVGFSV RKSTSHKSSE NITKVRTFVC 180 SREGYNRDKK SLEAKKPRLD TRIRCPEN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16019 | 0.0 | inflorescence| leaf| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309418.1 | 1e-120 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1W0W7B6 | 1e-119 | A0A1W0W7B6_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1W0W7F1 | 1e-119 | A0A1W0W7F1_SORBI; Uncharacterized protein | ||||
STRING | MLOC_70827.2 | 1e-116 | (Hordeum vulgare) | ||||
STRING | GRMZM2G114461_P01 | 1e-117 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 2e-13 | GATA-type zinc finger protein with TIFY domain |