PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004312 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | WOX | ||||||||||||
Protein Properties | Length: 215aa MW: 24005 Da PI: 7.7624 | ||||||||||||
Description | WOX family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.5e-19 | 93 | 153 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++W qNrRa+ k+ Sof004312 93 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWVQNRRARSKR 153 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 97.4 | 1.2e-31 | 92 | 155 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++W QNr+aR+++kq Sof004312 92 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWVQNRRARSKRKQ 155 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-15 | 88 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.669 | 89 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-12 | 91 | 158 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 92 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.97E-12 | 93 | 155 | No hit | No description |
Pfam | PF00046 | 5.6E-17 | 93 | 153 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEWGDRAKAS AAAVAADERA GGGEVLGGYV KVMTDEQMEV LRKQISIYAT ICEQLVDMHR 60 TLTEHQDTIA GMRFSNLYSD PLIIPGGHKI TARQRWQPTP MQLQILENIF DQGNGTPSKQ 120 KIKEITAELS HHGQISETNV YNWVQNRRAR SKRKQAVSLP NTSNAESQAE VEEESFHRQE 180 AQSPDRFTPK INKGYWVGSP VAGQGISKGN ALQLF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.22931 | 0.0 | crown| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456540.1 | 1e-106 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 3e-85 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | C5XN90 | 1e-105 | C5XN90_SORBI; Uncharacterized protein | ||||
STRING | Sb03g038080.1 | 1e-105 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 5e-65 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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