PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004279 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 216aa MW: 24815.6 Da PI: 4.3848 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.1e-09 | 65 | 107 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+W++ + +l++++ +q+G++ ++ I + ++ +t+ q++ ++ Sof004279 65 RGKWSKSDTDLFYEGLRQFGSD-FAMIQQLFP-DKTRHQVRQKFK 107 89********************.*********.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.1E-25 | 58 | 138 | No hit | No description |
SuperFamily | SSF46689 | 8.97E-11 | 59 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.26 | 63 | 114 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-8 | 64 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 65 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-5 | 67 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
XRARVNPKEA PSGPSSNTRS FELGDMDDLD YRDEEARFFD NDGTENHVQN ATKLNYQSYM 60 NKPARGKWSK SDTDLFYEGL RQFGSDFAMI QQLFPDKTRH QVRQKFKSEE KKNPLLVHDA 120 IIHRSGDNLY FKKVIKQLNI EDVVLPEINN TQKQDGASSE RGPGNENVLD DFNEEENSSN 180 WSNEEHGGQM ADVQEEHDLG KGGDDDDDLG DVFDWY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.23761 | 0.0 | callus| crown| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320644.1 | 1e-133 | transcription factor TFIIIB component B'' | ||||
TrEMBL | A0A1B6PF40 | 1e-131 | A0A1B6PF40_SORBI; Uncharacterized protein | ||||
STRING | Sb07g001792.1 | 1e-132 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 8e-31 | MYB_related family protein |