PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004211 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||||||
Protein Properties | Length: 219aa MW: 22937.8 Da PI: 8.8824 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.00062 | 153 | 179 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ Er RR+ri + ++ L +l+P + Sof004211 153 SHSLPERVRRERIIELMQFLHDLVPGC 179 79999********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.33E-10 | 147 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.846 | 149 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-9 | 149 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
XSLCQGLLDL DDDKFSAMCS AFGYLQEWPD LGAMCGANLG VPAVAAAAPS ARDGNDSSSC 60 SGSGGGGGGC RKRRPDAYLD AKGGANDMSK RPRGKQLSGL SEIAAPGKGK QERPKAGTKK 120 KAEAAAAAAA AAAAGHKTDY IHVRARRGQA TDSHSLPERV RRERIIELMQ FLHDLVPGCI 180 KVTGKACMLY EIINSVQSLL KQVEFLSMNN VAFNPGGEL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.14677 | 0.0 | leaf| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452680.1 | 3e-97 | transcription factor bHLH76 | ||||
TrEMBL | A0A3L6ELD8 | 9e-98 | A0A3L6ELD8_MAIZE; Transcription factor bHLH63 | ||||
STRING | Sb04g030530.1 | 1e-96 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 1e-34 | cryptochrome-interacting basic-helix-loop-helix 1 |