PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004125 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | E2F/DP | ||||||||||||
Protein Properties | Length: 222aa MW: 23956.7 Da PI: 8.1988 | ||||||||||||
Description | E2F/DP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.3 | 2.3e-27 | 84 | 171 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr+++++ ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g Sof004125 84 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWRG 171 789********...*****999************************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-44 | 79 | 177 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.3E-38 | 83 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.6E-25 | 85 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.11E-20 | 86 | 172 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVSGAGTSGG AAHSASTGGG GGSPSDRGGA APSASASVST PASESTVARR LNGLDLQGDD 60 APSSQPAASK KKKRGTRAVG PDKNGRGLRQ FSMRVCEKVE SKGRTTYNEV ADELVAEFSD 120 PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSMNDI 180 EELKTEVIGL KGRIDQKNAY LQEFTRSICM FFKTWFDGNE HL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-38 | 77 | 176 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.7300 | 0.0 | inflorescence| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983025.1 | 1e-135 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 2e-77 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | K4AC69 | 1e-134 | K4AC69_SETIT; Uncharacterized protein | ||||
STRING | Si036476m | 1e-134 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 3e-67 | Transcription factor DP |