PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003978 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | GATA | ||||||||||||
Protein Properties | Length: 227aa MW: 24364.9 Da PI: 10.0519 | ||||||||||||
Description | GATA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.3e-17 | 143 | 179 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt Tp++Rrgpdg++tLCnaCGl+++ kgl Sof003978 143 CHHCGTNAtaTPMMRRGPDGPRTLCNACGLMWANKGL 179 ******9989***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 9.6E-12 | 7 | 42 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 15.373 | 7 | 42 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.9E-13 | 10 | 41 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.8E-16 | 66 | 108 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.334 | 66 | 108 | IPR010402 | CCT domain |
SMART | SM00401 | 6.3E-13 | 137 | 195 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.671 | 137 | 196 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.42E-12 | 141 | 189 | No hit | No description |
CDD | cd00202 | 7.95E-16 | 142 | 185 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.7E-16 | 142 | 184 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 143 | 170 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-15 | 143 | 179 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVPGTVPPMA TNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELSSLGG ASSSAPYSKR 60 LNFPHRVASL MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKP KPDEIAAASE 120 MAAVDGSPNW ALVEGRPPSA AECHHCGTNA TATPMMRRGP DGPRTLCNAC GLMWANKGLL 180 RDLSKSPVPL QVMQSAPLLD AGNGSAMSAP GSELENAAAA MANGHES |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.2348 | 0.0 | callus| crown| inflorescence| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304768.1 | 1e-152 | GATA transcription factor 20-like isoform X2 | ||||
Swissprot | Q5Z4U5 | 1e-124 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | C5Z8W2 | 1e-149 | C5Z8W2_SORBI; Uncharacterized protein | ||||
STRING | Sb10g028750.1 | 1e-150 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-67 | ZIM-like 1 |