PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003951 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB | ||||||||||||
Protein Properties | Length: 228aa MW: 25447.8 Da PI: 7.2505 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl Sof003951 14 RGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++ ++k lG++ W+ Ia+ ++ gRt++++k++w++ Sof003951 67 RGSFSQQEEDLIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 110 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.404 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.97E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.073 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.53E-12 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGREAAVARP KLRRGLWSPE EDEKLYNHII RYGVGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGSF SQQEEDLIIS LHKILGNRWS QIASQLPGRT DNEIKNFWNS CIKKKLRQRG 120 IDPATHKPLN NDDVVAADDN AVAPHRHQDD KQLASPTDDH CFAAMDAASS DDPLAPHSPT 180 VSFDPLSVTN VPTMQXGFYV AAHSFGRSDN HLCDYXGGEL VSDAATTX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 10 | 116 | 3 | 108 | B-MYB |
1h8a_C | 7e-31 | 3 | 116 | 16 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.9844 | 0.0 | inflorescence| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457980.1 | 1e-141 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 2e-78 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A0C6WCP4 | 1e-156 | A0A0C6WCP4_9POAL; ScMYB15 protein | ||||
STRING | Sb03g024500.1 | 1e-140 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 5e-76 | myb domain protein 86 |