PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003940 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||||||
Protein Properties | Length: 228aa MW: 24498.6 Da PI: 10.2959 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8.1e-14 | 146 | 192 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI++L+ Sof003940 146 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 192 799***********************66......****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.5E-9 | 6 | 49 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.047 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-17 | 145 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-15 | 145 | 196 | No hit | No description |
Pfam | PF00010 | 2.5E-11 | 146 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-17 | 146 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-16 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
XPGWYVRASL AQSAGLRTVV FLPCKGGVLE LGSVVPVRET PETVRAIQTA LAVTPPAREE 60 CMRIFGKDLS PSGRTPRSGD NWAPQLGAQA TASKEAAAAR PKAPEPPRSI DFTKPGKPEQ 120 QAGGGEERRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP KISKMDKASL 180 LSDAIAYIQE LEDRLHRGGG GGSACSAARA ESPAVEGKAM QDEVGACP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-27 | 140 | 195 | 2 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 135 | RRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.13176 | 0.0 | bud| crown| inflorescence| meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456225.1 | 1e-118 | transcription factor bHLH13 | ||||
Swissprot | A0A3Q7H216 | 8e-47 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | C5XHM5 | 1e-117 | C5XHM5_SORBI; Uncharacterized protein | ||||
STRING | Sb03g032420.1 | 1e-117 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 8e-32 | bHLH family protein |
Publications ? help Back to Top | |||
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