PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003734 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | AP2 | ||||||||||||
Protein Properties | Length: 235aa MW: 25443.2 Da PI: 9.5025 | ||||||||||||
Description | AP2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.6e-15 | 132 | 191 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++++gr++A+++d + g ++ ++++lg ++ +e+Aaka++ a++k++g Sof003734 132 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 191 57*******************666664478446*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.46E-20 | 132 | 201 | No hit | No description |
Pfam | PF00847 | 9.7E-12 | 132 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-17 | 132 | 201 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-15 | 133 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.742 | 133 | 199 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-28 | 133 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 134 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 181 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
GSTSTNNWLG FASFSGAADA VLHPLPPQGE ADAEAPMLED FLGLQEPTAP VAARPFAGSG 60 ASSIGLSMIK NWLRSQPAPA PAGVDSMALA TTATSPERSR KVVDGGESGG IILVDTAQQR 120 KASVDTFGQP TSIYRGVTKH RWTGRYEAHL WDNSCRREGQ TRKGRQVYLG GYDKEEKAAK 180 AYDLAALKYW GTTTTTNFPM SNYXKELEEM KHMSRQEYVA SLRRKSSGFS RGASI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.7920 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979180.1 | 1e-123 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8LSN2 | 1e-73 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A368S6J6 | 1e-121 | A0A368S6J6_SETIT; Uncharacterized protein | ||||
STRING | Si028170m | 1e-121 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 3e-59 | AP2 family protein |