PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003674 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | G2-like | ||||||||||||
Protein Properties | Length: 238aa MW: 26305.8 Da PI: 10.6263 | ||||||||||||
Description | G2-like family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.1 | 2e-33 | 84 | 138 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl Sof003674 84 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 138 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.738 | 81 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 81 | 139 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.76E-16 | 84 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 84 | 139 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-8 | 86 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-20 | 179 | 224 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
XSKKGEGESR GTFPRIGSFA FGGRRRPLSL SSRRPCGGRQ RQPQEEDMFP PGLIHHRPDA 60 PAPGDGAPRS GPGGPSLVLT ADPKPRLRWT ADLHERFVDA VAQLGGPEKA TPKTILRTMG 120 VKGLTLFHLK SHLQKYRLGK QSGKEGSEQS KDASYLLDAQ SGMSVSPRVP AQEMKESQEV 180 KEALRAQMEV QRRLHEQVEV QKRVQIRMEA LQKYFDSILA SACKIVTEQF ASSGFSIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 84 | 140 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.5811 | 0.0 | inflorescence| meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149061.1 | 1e-130 | myb family transcription factor-related protein | ||||
Swissprot | Q94A57 | 2e-71 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A368Q000 | 1e-134 | A0A368Q000_SETIT; Uncharacterized protein | ||||
STRING | Si030441m | 1e-134 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 2e-72 | G2-like family protein |
Publications ? help Back to Top | |||
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