PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003554 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||||||
Protein Properties | Length: 242aa MW: 25784.4 Da PI: 5.0607 | ||||||||||||
Description | B3 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 148 | 234 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W+++ + + r++ t+GW++Fv++++L gD++vF Sof003554 148 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRTS-TXDAPRHLVTNGWSNFVNQKKLVGGDSIVFI 234 89****************************996555555..8999************6.455557999*********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-27 | 141 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.29E-22 | 143 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.44E-15 | 147 | 233 | No hit | No description |
SMART | SM01019 | 8.2E-10 | 148 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-15 | 148 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.674 | 148 | 242 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
VPGFTHASAD AWGGVGGGLE MITFVDSAAM ERERESDRCL DPQLWHACAG GMVQMPPVHS 60 KVYYFPQGHA EHAQGPVVDL PAGRVPALVL CRVAAVRFMA DPDTDEVFAK IRLAPVRSNE 120 QPGYAADADD AIGAAAAGGA QEDKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS 180 ADPPVQTVLA KDVHGVVWKF RTSTXDAPRH LVTNGWSNFV NQKKLVGGDS IVFIPAENGD 240 LX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-45 | 23 | 241 | 32 | 252 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.17012 | 0.0 | inflorescence| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966255.1 | 1e-130 | auxin response factor 18 | ||||
Refseq | XP_004966256.1 | 1e-130 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 1e-119 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | K3XVN3 | 1e-129 | K3XVN3_SETIT; Auxin response factor | ||||
STRING | Si005991m | 1e-129 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 7e-88 | auxin response factor 16 |
Publications ? help Back to Top | |||
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