PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003501 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||||||
Protein Properties | Length: 244aa MW: 27020.6 Da PI: 9.1536 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.1e-11 | 42 | 89 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +++ + ++ Kl+Ka iL A + + +L Sof003501 42 SKACREKMRRDKLNDRFLELSSVMNPG---KQAKLDKANILSDAARMVAQL 89 6789**********************9...9**************999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-13 | 31 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.322 | 38 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.76E-8 | 41 | 94 | No hit | No description |
Pfam | PF00010 | 1.1E-8 | 42 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-13 | 43 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-8 | 44 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
XLAIFCDGGL GIEGVNGDAC GFDQSNLGKR GRDEPSSSGP KSKACREKMR RDKLNDRFLE 60 LSSVMNPGKQ AKLDKANILS DAARMVAQLR GEAEKLKESN EKLRENIKDL KEEKNELREE 120 KVRLKVEKDR LEQQVKAMSV APTGYVPHIP HPASYHPAAF TPFVPPQQAP ANKSAPIPAP 180 FPEMAMWQWL PPTIVDTTQD PKLWPPNARG SYLGMLTHRA IFVHWAAIQS VSKVPGEESS 240 SQLA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.22481 | 0.0 | callus| crown| inflorescence| leaf| meristem| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314883.1 | 1e-149 | transcription factor ILR3-like isoform X2 | ||||
Swissprot | Q9FH37 | 6e-57 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A194YN84 | 1e-148 | A0A194YN84_SORBI; Uncharacterized protein | ||||
STRING | Sb04g001200.1 | 1e-146 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 8e-47 | bHLH family protein |