PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003475
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family AP2
Protein Properties Length: 245aa    MW: 26499.7 Da    PI: 5.7965
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17303045PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-793133725PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.21.7e-0730691555
        AP2 15 WvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
               W++     ++ g    +k  +lg+f t+eeAa+a++  + k++g
  Sof003475 30 WAVA---GKD-GrvaGNKDLYLGTFSTEEEAAEAYDITAIKFRG 69
               7766...444.335556***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.813777IPR001471AP2/ERF domain
SMARTSM003801.0E-83583IPR001471AP2/ERF domain
CDDcd000189.26E-144078No hitNo description
SuperFamilySSF541711.63E-94078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-104277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
XRTDGPGLTG STHACGCFYL QRCNQTSPAW AVAGKDGRVA GNKDLYLGTF STEEEAAEAY  60
DITAIKFRGL NAGTNFEIRR YNVESIMSSN IPMGSMSVGG RSNKALESPP SGSPDAIPVE  120
ASTAPLFAAL PVKYDQQQQD YLSMLTLQHH QQGNLQGLGF GLYSSGVNLD FANSHGTVSS  180
MTRCYVNGGT XFSHQQHQHH QQLQDQQQCE NETQQSSNSC FSLPFATPIA FNGSYESSMT  240
AGPLW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.106350.0bud| crown| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318155.11e-116AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ38e-25AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1B6PNN91e-115A0A1B6PNN9_SORBI; Uncharacterized protein
STRINGSb06g031120.11e-115(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-26AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]