PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003460 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 245aa MW: 28282.8 Da PI: 10.0164 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyeys+ Sof003460 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 105.1 | 8.6e-35 | 79 | 174 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+e+ ++ ++++e++kLk++ie++q+ q+hl+GedLe+L+lkeLqqLeqqLe+slk+iR++K++l+le+i++lq+kek+lqeenk L+k+l+e Sof003460 79 VLISAESDTQGNWCHEYRKLKAKIETIQKCQKHLMGEDLETLNLKELQQLEQQLESSLKHIRTRKSQLMLESISQLQRKEKSLQEENKVLQKELAE 174 55567788899*********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-34 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-41 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.5E-30 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.717 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLYEYSTD 60 SCMDKILERY ERYSYAEKVL ISAESDTQGN WCHEYRKLKA KIETIQKCQK HLMGEDLETL 120 NLKELQQLEQ QLESSLKHIR TRKSQLMLES ISQLQRKEKS LQEENKVLQK ELAEKQKALR 180 QQVHRDQTQQ QTRSSSSSFM IREAAPTTNI SIFPVAXGGR VVETAXTQPQ APVGLPPWMP 240 NHLSX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.22208 | 0.0 | inflorescence| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at early stage of flower development in the spikelet (rice flower) apical meristem and later in developing stamens, pistil primordia and differentiated anthers. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in sterile lemmas, at intermediate levels in stamens, and weakly in lemmas, paleas and carpels. {ECO:0000269|PubMed:10444103}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463864.1 | 1e-142 | MADS-box transcription factor 14 isoform X2 | ||||
Refseq | XP_021320421.1 | 1e-142 | MADS-box transcription factor 14 isoform X2 | ||||
Swissprot | Q10CQ1 | 1e-132 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | C5X094 | 1e-141 | C5X094_SORBI; Uncharacterized protein | ||||
STRING | Sb01g007790.1 | 1e-142 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 5e-80 | MIKC_MADS family protein |