PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003458
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 245aa    MW: 27141.1 Da    PI: 10.8939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-121788PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-41923PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.4e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE++ l  +v+++G g W+tI +          R+  ++k++w+++
        Sof003458  5 KQKWTSEEEDALRAGVRKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                     79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.768160IPR017930Myb domain
SMARTSM007174.4E-8459IPR001005SANT/Myb domain
PfamPF002491.3E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-14556IPR009057Homeodomain-like
SuperFamilySSF466893.07E-14659IPR009057Homeodomain-like
CDDcd116601.25E-20656No hitNo description
SuperFamilySSF467851.47E-15109189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.3E-16110175IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.8E-14110184IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150425.788112180IPR005818Linker histone H1/H5, domain H15
PfamPF005384.5E-10114172IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGAPKQKWTS EEEDALRAGV RKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSSKVRV PRITGPASSP LSSSQALLPA PNKVTEATLP ADAEKKPQDG KTPPKYGAMI  120
MEALSELNEP NGSDIAAIFR FIEERHAVQP TFRRFLTAKL RRLADSNKIV KIDKSYRLPD  180
SFATRTPAXI KTSAPKQKDP SKPSKVSKTI RLLLAXALHL KQRWQLAVKV ADREAXAHDA  240
HDQMX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.99169e-89bud| crown| inflorescence| leaf| meristem| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456231.11e-141single myb histone 4
SwissprotQ6WLH41e-129SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0C6WCP51e-144A0A0C6WCP5_9POAL; ScMYB20 protein
STRINGSb03g032530.11e-140(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-45telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]