PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003412 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||||||
Protein Properties | Length: 247aa MW: 27186.3 Da PI: 8.5987 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.4e-13 | 118 | 169 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR++iN+ ++ Lr+l+P+ ++++ + + + +++Y+++L+ Sof003412 118 QRMTHIAVERNRRRKINEYLAVLRSLMPPY---YAQRGDQTSFVGGTINYVRELE 169 79***************************9...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.00E-11 | 116 | 170 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.5E-13 | 116 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-15 | 116 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.945 | 117 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-5 | 123 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MALLDAVVHP SQPQGHFGYG HWDCSYGPPF LSDATGGYGD SHVPYAGDWD PFLLASSLVH 60 DAQEWGQVVG SNKASPEREV MQSSAIEPPS SPVTTTTTTK RKRRRAKVVK NEEETESQRM 120 THIAVERNRR RKINEYLAVL RSLMPPYYAQ RGDQTSFVGG TINYVRELEN CSKSLEVAKD 180 LKEHSGNGQS CIPFGAFFNF PRYSSANSCL PPRVPATHII FGRGSSKFGG ELPVHGGLVT 240 TGLLNKX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 104 | KRKRRR |
2 | 100 | 104 | RKRRR |
3 | 118 | 129 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.5795 | 0.0 | inflorescence| meristem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002489234.2 | 1e-107 | transcription factor bHLH96 | ||||
TrEMBL | A0A109NDP6 | 1e-106 | A0A109NDP6_SORBI; Uncharacterized protein | ||||
STRING | Sb0012s004780.1 | 3e-86 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-34 | bHLH family protein |