PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003282 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | HB-other | ||||||||||||
Protein Properties | Length: 253aa MW: 28484 Da PI: 6.3147 | ||||||||||||
Description | HB-other family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.6 | 3.3e-21 | 100 | 156 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Sof003282 100 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 156 688999************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 85 | 155 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.01E-20 | 85 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 97 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-19 | 98 | 161 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.99E-19 | 100 | 158 | No hit | No description |
Pfam | PF00046 | 8.3E-19 | 100 | 155 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.5E-5 | 128 | 137 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 132 | 155 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.5E-5 | 137 | 153 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MPPMIVRNSA AAYGSSSALS LGQPNLLDSQ QQLQLQQALQ QQHLLDQIPA TTAESGDNMG 60 RGGVRGSDPL GDEFESKSGS ENVDGVSVDD QDPNQRPSEK KRYHRHTQHQ IQEMEAFFKE 120 CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKNQHER QENSQLRAEN EKLRAENMRY 180 KEALSSASCP NCGGPAALGE MSFDEHHLRV ENARLREEID RISNIXXKYV GQPMVSFPVL 240 SSPLAGARPS PLX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15942 | 0.0 | crown| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008667765.1 | 1e-143 | uncharacterized protein LOC100279217 isoform X3 | ||||
Swissprot | Q0J9X2 | 1e-139 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | A0A1E5WHW1 | 1e-150 | A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2 | ||||
STRING | GRMZM2G001289_P01 | 1e-142 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.3 | 1e-88 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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