PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003178 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | DBB | ||||||||||||
Protein Properties | Length: 257aa MW: 27706.8 Da PI: 4.656 | ||||||||||||
Description | DBB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.1 | 1.5e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e ++ C ++ lC+ C +e+H H++ p Sof003178 4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46 7******99*********************6678888898877 PP | |||||||
2 | zf-B_box | 27 | 9.6e-09 | 53 | 85 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + ++C+ ++ek + +fC +++ l+C+dC + +H Sof003178 53 KLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85 5789**************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.011 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.53E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.1E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.4E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.788 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-6 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.10E-7 | 55 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MKIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SAKLPRCDVC 60 QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFASAS ACSDGACDAH 120 DYDHHAPPKA TIEPPQATVS AAAQQVPSPP QFLPQGWAVD ELLQFSDYES SDKLHKESPL 180 GFKELEWFAD IDLFHEQAPK AGRTSAEVPE PFGSQAPNDA AYYRPAKAAA GAGVRQSKKA 240 PIEVTDDEDY FIVXDLG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.10633 | 1e-180 | callus| crown| inflorescence| leaf| meristem| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151151.2 | 1e-165 | uncharacterized protein LOC100284784 | ||||
TrEMBL | B4FR48 | 1e-163 | B4FR48_MAIZE; Uncharacterized protein | ||||
TrEMBL | B6TXF7 | 1e-163 | B6TXF7_MAIZE; Salt tolerance-like protein | ||||
STRING | Sb04g025400.1 | 1e-161 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 1e-70 | DBB family protein |