PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof002972

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 266aa MW: 29728.4 Da PI: 6.794

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17335229	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-49230	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.8e-05	37	86	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ ++erE+ Rd+ N+ f eL +l ++ + + Ka iL +++ +k+L Sof002972 37 KKVHKSEREKHKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRILKDL 86 678899**********************97....57788888888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-11	33	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-9	33	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.639	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MVPRDRAHST VAATTAPAEK LVQGPIQNNK CEKKAPKKVH KSEREKHKRD KQNDLFGELG 60 NMLEPDRQNN GKACILSDTT RILKDLLSQV ESLRKENNTL KNESHYVALE RNELLDETNV 120 IRGEISELQN ELRMRLEGNP IWSHDTSRSN LTAPHPTTTV FTLQHSAHPQ VIATMALPLQ 180 QPAVVEQSYA APRRELQLFP EAAPTEDTEP PQNQGVSNNV MRPQARYPPV VTTLPVHVYP 240 VLPRMEDEQC SSGTTGSREE GGVGNC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.13216	0.0	leaf\| root\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463230.1	0.0	transcription factor bHLH47
Swissprot	Q69V10	1e-118	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	C5X366	0.0	C5X366_SORBI; Uncharacterized protein
STRING	Sb02g040140.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-30	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]