PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof002899 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | DBB | ||||||||||||
Protein Properties | Length: 270aa MW: 28622.5 Da PI: 6.331 | ||||||||||||
Description | DBB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17 | 1.2e-05 | 52 | 93 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedC..qqllCedCllee.Hkg..Htv 39 r+C ++ ++ l+C++C +++lC +C H + H++ Sof002899 52 GRRCGSCKAAPAALHCRTCvgGSFLCTTCDARPaHARlgHER 93 689****************7668*******999998888876 PP | |||||||
2 | zf-B_box | 21.8 | 4e-07 | 94 | 139 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H H +vp+ Sof002899 94 VWMCEVCELAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 139 689*****************************44677777888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-4 | 50 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.352 | 92 | 139 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.09E-6 | 95 | 139 | No hit | No description |
SMART | SM00336 | 1.3E-7 | 97 | 139 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
XKNRVDNHRC HCRSQPSLVP PRQPGEAGER RLLLADDLVR SMELHKYWGV EGRRCGSCKA 60 APAALHCRTC VGGSFLCTTC DARPAHARLG HERVWMCEVC ELAPAAVTCK ADAAVLCAAC 120 DADIHDANPL ARRHARVPVA PIGSEAAAAA VEAMLFGTGE AAAASEADEH NAAAAEQQQH 180 AHAHALNLNV EAKDMKLDYL FSELDPYLSV DIPRFQHADS VVPNGAGAAA VELDFTCGIG 240 VKHSSYSSYT ATXLDLAHSG SSSEVGVVPX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15488 | 0.0 | callus| leaf| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001355037.1 | 1e-121 | uncharacterized protein LOC100281837 | ||||
TrEMBL | A0A3L6D9X2 | 1e-127 | A0A3L6D9X2_MAIZE; Zinc finger protein CONSTANS-LIKE 5 | ||||
STRING | GRMZM2G038783_P01 | 1e-120 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 4e-22 | CONSTANS-like 5 |