PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002899
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family DBB
Protein Properties Length: 270aa    MW: 28622.5 Da    PI: 6.331
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17423540PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-39133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-055293339
   zf-B_box  3 erkCpeHeekelqlfCedC..qqllCedCllee.Hkg..Htv 39
                r+C  ++  ++ l+C++C  +++lC +C     H +  H++
  Sof002899 52 GRRCGSCKAAPAALHCRTCvgGSFLCTTCDARPaHARlgHER 93
               689****************7668*******999998888876 PP
2zf-B_box21.84e-0794139342
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                 ++C+ +e  ++   C+ +   lC+ C   +H        H +vp+
  Sof002899  94 VWMCEVCELAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 139
                689*****************************44677777888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-45096IPR000315B-box-type zinc finger
PROSITE profilePS5011910.35292139IPR000315B-box-type zinc finger
CDDcd000217.09E-695139No hitNo description
SMARTSM003361.3E-797139IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
XKNRVDNHRC HCRSQPSLVP PRQPGEAGER RLLLADDLVR SMELHKYWGV EGRRCGSCKA  60
APAALHCRTC VGGSFLCTTC DARPAHARLG HERVWMCEVC ELAPAAVTCK ADAAVLCAAC  120
DADIHDANPL ARRHARVPVA PIGSEAAAAA VEAMLFGTGE AAAASEADEH NAAAAEQQQH  180
AHAHALNLNV EAKDMKLDYL FSELDPYLSV DIPRFQHADS VVPNGAGAAA VELDFTCGIG  240
VKHSSYSSYT ATXLDLAHSG SSSEVGVVPX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.154880.0callus| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355037.11e-121uncharacterized protein LOC100281837
TrEMBLA0A3L6D9X21e-127A0A3L6D9X2_MAIZE; Zinc finger protein CONSTANS-LIKE 5
STRINGGRMZM2G038783_P011e-120(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-22CONSTANS-like 5