PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002613
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 287aa    MW: 31071.4 Da    PI: 10.3742
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17370988PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-83725PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.43.2e-3369123155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Sof002613  69 KPRLRWTADLHDRFVDAVAQLGGPDKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 123
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-3266124IPR009057Homeodomain-like
PROSITE profilePS5129410.15166126IPR017930Myb domain
TIGRFAMsTIGR015571.9E-2469124IPR006447Myb domain, plants
SuperFamilySSF466891.45E-1669124IPR009057Homeodomain-like
PfamPF002493.2E-871122IPR001005SANT/Myb domain
PfamPF143792.8E-22164209IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
XRFGGGTGRG ESKSAGELRA GKMFPSLIHH AGRARPDVAA AEDAPRSGGG LGLHGHGGGP  60
SVVLTADPKP RLRWTADLHD RFVDAVAQLG GPDKATPKAI MRTMGVKGLT LFHLKSHLQK  120
YRLGRQSGKE LTEQSKDASY LMEAQSGTTL SPRGSTPDVK ESQEVKEALR AQMEVQRRLH  180
EQVEVQKHMQ IRMEANQKYI DTILDKAFKI VSEQLSGFSI SDQDPPILNS AGVMLSPADH  240
LSSSVFSQLS VSSVSIHSPG GKGLPHIADS HVFSQRPPEQ LKRXSRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1969125157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1969125157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1969125157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1969125157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.56080.0bud| crown| inflorescence| meristem| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140549.11e-161uncharacterized protein LOC100272614
SwissprotQ94A576e-70PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A317Y4C31e-159A0A317Y4C3_MAIZE; Protein PHR1-LIKE 3
TrEMBLB4FPL51e-159B4FPL5_MAIZE; Myb family transcription factor-related protein
TrEMBLK4JFL61e-159K4JFL6_MAIZE; G2-like transcription factor (Fragment)
STRINGGRMZM2G113742_P011e-160(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.17e-71G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]